morgantaschuk Goto Github PK

bcc2020.github.io

Website for #BCC2020

check-directory-permissions

Exercises the permissions that production directories should have on the cluster (particularly run folders)

file-provenance-report-reformatter

Connects to SeqWare file provenance report (http://seqware.io) and reformats it for specific purposes

forty-jekyll-theme

fpr-analysis

Perform some analysis on the contents of the file provenance report

grep-rc

Searches a tab-delimited file with a regex and selects the rows AND columns that match the query

idep

Integrated Differential Expression and Pathway analysis

language-randomizer

Create random words for invented languages according to grammar rules

machine-setup

For when I need to set up new machines for a variety of reasons

markdown-resume

Takes Markdown formatted files and compiles them into a resume

mavevis

visualization for MaveDB

miso-lims

MISO: An open-source LIMS for NGS sequencing centres

morgantaschuk.github.io

Source and hosting for morgantaschuk.com

niassa-docs

Host the website for Niassa

one-workflow-many-ways

Implementing bamqc over and over again

project-sandbox

Sandbox for personal development projects

seqware-meta-reporting

A few scripts that crawl through OICR's seqware_meta_db and report pertinent statistics

vcf-filter

Remove variants from a VCF file that overlap with one another for testing purposes.

vizoozie

Visualization tool for the Oozie workflows.