Comments (1)
mbrush
commented on June 15, 2024
These IRIs were added to support some tooling that I Shahim and I are developing, which reads these property IRIs to support module extraction or URI creation scripts. They are not part of GENO proper, and should not have been in geno.owl in the first place. Apologies . . . going forward I will keep such properties segregated in a separate owl file that is not in the import chain.
Generally, GENO needs some major refactoring to clean up outdated and experimental features, and align with some recent modeling decisions and developments. I hope to get to this in the next month or so. Note that all IRIs used in the Monarch data should remain valid, but there will be major changes to the ontology structure. Just a heads up in case there are any dependencies on your end.
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Related Issues (20)
- Add 'diplotype' class HOT 1
- Implement classes describing phenotype/disease penetrance
- Clarification on "gene allele" http://purl.obolibrary.org/obo/GENO_0000014 HOT 4
- Terms to describe transmission/inheritance of variance (from DECIPHER) HOT 1
- Integration issues with SciGraph HOT 8
- Typo in label for GENO:0000147 HOT 1
- Represenetaiton of copy number variation
- Mechanism of Pathogenicity terms HOT 1
- Alternative label on http://www.geneontology.org/formats/oboInOwl#hasDbXref in geno.owl HOT 1
- term request: mosaic inheritance and/or genotype HOT 1
- Include OBO and JSON as released files HOT 3
- Representing uniparental disomy HOT 14
- Do not use raw github URLs in imports HOT 2
- geno-developer imports itself
- RO compatibility issue HOT 4
- stalk/short arm and acen terms
- new inheritance terms HOT 1
- Consider replacing some terms with PCO classes
- grouping term for population, strain, background, fish, genotype, model? HOT 1
- Change GENO license from CC-BY-SA to a CC-BY 4 HOT 4
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