Comments (10)
The official repo is elsewhere?
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Wait, when and how did this happen? What is the official repo?
from freesolv.
Ah, I see, you have a fork in mobleylab
.
How about this:
- You delete your fork
- I transfer the repository to
mobleylab
so that you own the main repo - We enable zenodo integration so we automatically assign a DOI to each release, and add a zenodo badge to the
README.md
- We update the
README.md
with the list of contributors from my lab who helped with the cleanup here so we don't accidentally leave anyone off future publications, and so they get credit - We cut a new release
from freesolv.
@jchodera - sounds great. I'll delete my fork now. Thanks.
from freesolv.
Also, I definitely need to know who was involved with any sort of extensive cleanup (I didn't recall that anyone had done anything substantial other than put it onto GitHub, but that's why it's important to have a record) as we're going to have a new paper soon so we'll need them for the authors list.
from freesolv.
OK, my fork is now deleted, @jchodera . Thanks.
from freesolv.
Looks like I need temporary admin rights to mobleylab
:
You donβt have admin rights to MobleyLab
from freesolv.
I just sent an invite to the requisite team, @jchodera .
from freesolv.
Transferred!
Can you handle the other steps?
- Enable zenodo integration so we automatically assign a DOI to each release, and add a zenodo badge to the README.md
- Update the README.md with the list of contributors from my lab who helped with the cleanup here so we don't accidentally leave anyone off future publications, and so they get credit. You can use the git commit history to check.
- Cut a new minor release, which will trigger a zenodo DOI assignment
from freesolv.
Mostly, yes, @jchodera - except that I need to know if there is anyone from your lab who did anything NOT recorded in the pull requests. The pull requests basically just show three things:
- Lee-Ping added a column to a text file by pulling it from a pickle file
- Kyle removed some extra files left behind by Antechamber
- You added a script to charge molecules via Bayly's recommended procedure
All of the other issues I'm seeing on there were initiated and resolved by me. But maybe I'm missing other important contributions from your group??
Unless I'm missing additional contributions, this probably means you would get included on a publication and the other two would likely get acknowledgments...?
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Related Issues (20)
- Decide any other supporting files/data which ought to be captured when database is re-constructed from primary data HOT 2
- Re-construct database files from primary data HOT 11
- Strip water molecules from all topology/coordinate files in current database HOT 8
- Protocol for generating solvated input files for various codes (AMBER, gromacs) HOT 1
- Have GBSA models been benchmarked on FreeSolv? HOT 4
- In next update, include a json format version of database HOT 1
- Flag molecules with possibly problematic tautomers (and investigate tautomers for them)?
- Update column names to be more informative HOT 2
- Make CHARMM input files via ParmEd
- Potential duplicate molecules in FreeSolv Set HOT 12
- Set up Travis-CI testing
- GAFF version HOT 5
- Cannot generate GAFF mol2 from Tripos mol2 file HOT 2
- rebuild_freesolv.py script HOT 2
- Problems with processing some SMILES - omega returned error code 0
- Sanitize SDF files
- gromacs-mdp:with verlet lists rcoulomb!= rvdw is not supported HOT 3
- mobley_3323117 (sulfolane) has non-standard SMILES HOT 1
- Is gromacs_energies available to download anywhere? HOT 4
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