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rueuntal avatar rueuntal commented on May 30, 2024

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dmcglinn avatar dmcglinn commented on May 30, 2024

It does appear to be because of the reordering b/c I changed this part of the rarefaction function and it returned the correct answer:

# I changed this old line in the function rarefaction
new_order = sample(1:n)
# to this so that the shuffled order stopped
new_order = 1:n 

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rueuntal avatar rueuntal commented on May 30, 2024

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dmcglinn avatar dmcglinn commented on May 30, 2024

I found the bug, I'm going to submit a PR for this in a few minutes.

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dmcglinn avatar dmcglinn commented on May 30, 2024

I think so on the sensitivity analyses let me first make sure this updated version matches some simple by hand examples to make sure there are no other bugs.

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rueuntal avatar rueuntal commented on May 30, 2024

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