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MMgroup@unibas's Projects

beta-diketones icon beta-diketones

Data set for a neural network based examination of malonaldehyde, acetoacetaldehyde and acetylacetone

briz icon briz

Collection of python scripts to interface with remote computer clusters

charmm.ti icon charmm.ti

Perform thermodynamic integration in CHARMM

co2.asw icon co2.asw

Repository containing the potential energy curve for the CO + O -> CO2/COO reaction on amorphous solid water.

dbb_ca icon dbb_ca

Data set used to learn a representation of the potential energy surface for the 2,3-dibromobutadiene with calcium

dcm-charmm-test-suite icon dcm-charmm-test-suite

Comprehensively test functionality, stability and speed of DCM routines in CHARMM (for development use)

dmc_gpu_physnet icon dmc_gpu_physnet

GPU implementation of the diffusion monte carlo algorithm for use with PhysNet interatomic potentials

dssp icon dssp

dssp : software for secondary structure assignment, now extended for reading MD trajectory files

dtd icon dtd

Construct a distribution-to-distribution (DTD) model for a reactive atom-diatom collision system.

eurohack16 icon eurohack16

Common repository for overview and information of the 2nd European GPU-programming Hackathon "EuroHack16"

eutectic icon eutectic

Experimental data and simulated script and data files for the publication https://doi.org/10.1021/jacs.2c04169

fad icon fad

Training files and ASE Calculator of the PhysNet potential model for formic acid dimer

fittingwizard icon fittingwizard

A JavaFX application that assists the user for perfoming forcefield parameters optimisation by using Quantum Chemistry and Molecular Dynamics software

fittingwizardweb icon fittingwizardweb

A Java-based WebApp that assists the user for perfoming forcefield parameters optimisation by using Quantum Chemistry and Molecular Dynamics software

freesolv icon freesolv

Experimental and calculated small molecule hydration free energies

h2phe icon h2phe

Potential energy surface for H<sub>2</sub><sup>+</sup>--He

hydra icon hydra

Extended training set for AC2, LS2 and LS3

irtools icon irtools

Some tools for IR and 2DIR spectroscopy modelling.

kmeans_proteins_clusters icon kmeans_proteins_clusters

C++ implementation of the kmeans algorithm (http://en.wikipedia.org/wiki/K-means_clustering) for finding clusters of stable microstates when studying ligand migration in proteins

mc_lj icon mc_lj

C program for MC simulations applied to Lennard Jones clusters only.

mdcm icon mdcm

ML code to fit Minimal Distributed Charge Models (MDCMs)

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