Comments (3)
(.venv) aek27@dcc-login-03 /work/aek27/TestingFemTools2021/QsymTry1 $ cat slurm-3390753.out
INFO:fem.mesh.GenMesh:872176/872176 nodes written to nodes.dyn
INFO:fem.mesh.GenMesh:843750/843750 elements written to elems.dyn
STARTED: Thu Feb 25 14:40:51 2021
HOST: dcc-ultrasound-01
Traceback (most recent call last):
File "/var/spool/slurmd/job3390753/slurm_script", line 36, in
generate_loads([0.1, 0.1, 0.75], [0.0, 0.0, -1.5], tukey_length=2.5)
File "/work/aek27/.venv/lib/python3.8/site-packages/fem/mesh/GaussExc.py", line 42, in generate_loads
load_nodeID_amp = read_process_nodes(sigma, center, sym, amp, amp_cut,
File "/work/aek27/.venv/lib/python3.8/site-packages/fem/mesh/GaussExc.py", line 80, in read_process_nodes
nodeGaussAmp = calc_tukey_amp(fields, center, sigma,
File "/work/aek27/.venv/lib/python3.8/site-packages/fem/mesh/GaussExc.py", line 249, in calc_tukey_amp
z_scale = tukey_z_scale(node_xyz[3], center[2], tukey_length, tukey_alpha)
File "/work/aek27/.venv/lib/python3.8/site-packages/fem/mesh/GaussExc.py", line 276, in tukey_z_scale
from scipy.signal import tukey
File "/work/aek27/.venv/lib/python3.8/site-packages/scipy/init.py", line 141, in
from scipy._lib._ccallback import LowLevelCallable
File "/work/aek27/.venv/lib/python3.8/site-packages/scipy/_lib/_ccallback.py", line 1, in
from . import _ccallback_c
File "_ccallback_c.pyx", line 210, in init scipy._lib._ccallback_c
File "/opt/apps/rhel7/python-3.8.1/lib/python3.8/ctypes/init.py", line 7, in
from _ctypes import Union, Structure, Array
ImportError: libffi.so.7: cannot open shared object file: No such file or directory
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The unit test is passing just fine: https://github.com/mlp6/fem/blob/main/tests/test_GaussExc.py
from fem.
Doesn't appear to be a bug; might be an issue with activating the venv.
from fem.
Related Issues (20)
- Supersonic shear imaging HOT 4
- Questions for ARF simulation with Field-II HOT 4
- BUG: PVD not saving 3D data anymore
- REFACTOR: GaussExc.py dealing with Tukey axial weighting
- REFACTOR: bc.py
- dynaField.m is gone
- v8.4.0 cannot build ext_modules if swig (and possibly gcc) not available
- write unit test(s) for finite time step create_res_sim extraction HOT 1
- convert res_sim output to use xarrays
- specify subset of timesteps to extract
- allow PVD/VTR output to have multiple components of displacement HOT 2
- CreateStructure.py HOT 1
- CreateStructure.py: use logical masks instead of iteration HOT 1
- create_res_sim: directly create HDF5/MAT/PVD from nodout HOT 1
- Generate XDMF to allow ParaView to read HDF5 file (instead of having to generate separate PVD/VTR files)
- jsondecode broken in Matlab 2020a? HOT 5
- expand ability to extract an image plane beyond the assumed axial-lateral view HOT 1
- need to update the example file? HOT 3
- Updating example files to point at singularity and have wrapper scripts? HOT 1
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