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adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

argure

Experiments with FRP GUIs

aseq

chef-informatics-cookbooks

coffee-script

Unfancy JavaScript

deca

Distributed exome CNV analyzer. Apache 2 licensed.

gatk-protected

GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

htslib

C library for high-throughput sequencing data formats

knockout

Knockout makes it easier to create rich, responsive UIs with JavaScript

knowyourdata-genomics

Lesson on Getting to Know Your Data for genomics

komonzu

Komonzu CLI client

material-ui

MUI Core: Ready-to-use foundational React components, free forever. It includes Material UI, which implements Google's Material Design.

middhacks-workshop

myseq

myseq-vcf

Query local or remote VCFs by genomic position

myseq.js

Javascript tools for interpreting personal genomes

npsv

Non-parametric structural variant genotyper

npsv-commands

Makefiles used to evaluate NPSV

npsv2

odgi

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

plumberdeploy

practicalgenomics

rclusterpp

Memory efficient clustering in R for large datasets

react-color-picker-cra

Create React App example

sv2

Support Vector Structural Variation Genotyper

svtyper

Bayesian genotyper for structural variants

truvari

Structural variant comparison tool for VCFs

vagrant

Vagrant is a tool for building and distributing virtualized development environments.

vagrant-aws

Plugin for Vagrant for working with Amazon AWS

workflows

Toil workflows for bigdatagenomics tools. Apache 2 licensed.