Comments (1)
sarthakpati
commented on May 26, 2024
This will go into a new module, GANDLF.utils with the following submodules and associated functions from current utils script:
sitk --- all functionality related to SimpleITK
resample_image
resize_image
perform_sanity_check_on_subject
torch --- all functionality related to torch
one_hot
reverse_one_hot
send_model_to_device
get_class_imbalance_weights
io --- anything related to input/parsing or writing a file
writeTrainingCSV
parseTrainingCSV
parameter_processing --- anything related processing parameter dictionary
populate_header_in_parameters
find_problem_type
populate_channel_keys_in_params
generic --- everything that doesn't go in above
fix_paths
checkPatchDivisibility
get_date_time
get_filename_extension_sanitized
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Related Issues (20)
- Add remaining files and functionalities for GANs
- Add unit testing for GANs
- Update GANDLF functionalities for compatibility with GAN pipelines
- AUROC error while running classification of pathology images HOT 3
- [FEATURE] Set `line-length` for `black` in the `project.toml` file HOT 1
- Config documentation for GANs
- Black configuration in pyproject.toml
- [FEATURE] Add the ability to split CSVs for training/validation/testing as a separate script HOT 1
- [FEATURE] Add the ability to generate training/validation/testing CSV with proportional splits HOT 1
- [FEATURE] Add tensorboard support HOT 2
- [FEATURE] speed up CI tests HOT 3
- [BUG] Moving from version `0.0.XX` to `0.Y.0` creates compatibility issues. HOT 2
- [FEATURE] Add a "migration guide" in documentation
- [BUG] Trying to train a model for classification gives a weird warning
- [FEATURE] Standardize the CLI option for output directory HOT 1
- [BUG] Loss signatures: CE Loss failure because of additional `params` argument HOT 1
- [FEATURE] Upgrade PyTorch to 2.2.1 HOT 2
- [BUG] Noise and Blur enhanced fail for certain images
- [BUG] final_preds_and_avg_probs.csv file is not generated after inference HOT 6
- [FEATURE] Include the output of `pip list` for debug info
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