mishahublog / bioargo Goto Github PK

Short summary of problem

When I used the get_data2ponman command to get the bioargo data into R, I was unable to download all files.

What you did

get_data2ponman(mode='geotime', location='atlantic_ocean', year='2017', month='02')

[1] "20170201_prof.nc\r" "20170202_prof.nc\r" "20170203_prof.nc\r" "20170204_prof.nc\r"
[5] "20170205_prof.nc\r" "20170206_prof.nc\r" "20170207_prof.nc\r" "20170208_prof.nc\r"
[9] "20170209_prof.nc\r" "20170210_prof.nc\r" "20170211_prof.nc\r" "20170212_prof.nc\r"
[13] "20170213_prof.nc\r" "20170214_prof.nc\r" "20170215_prof.nc\r" "20170216_prof.nc\r"
[17] "20170217_prof.nc\r" "20170218_prof.nc\r" "20170219_prof.nc\r" "20170220_prof.nc\r"
[21] "20170221_prof.nc\r" "20170222_prof.nc\r" "20170223_prof.nc\r" "20170224_prof.nc\r"
[25] "20170225_prof.nc\r" "20170226_prof.nc\r" "20170227_prof.nc\r" "20170228_prof.nc\r"
Do you want download all these files?

1: Yes
2: No

Selection: Yes
Error in download.file(paste(url, n, sep = ""), destfile = n) :
', reason 'Invalid argument'0201_prof.nc

What you expected to happen

I expected to be able to download all data after typing "Yes".

What happened

I received the error: Error in download.file(paste(url, n, sep = ""), destfile = n) :
', reason 'Invalid argument'0201_prof.nc

How urgent is this?

I am currently working on BGC Argo tools, so any information you may have will be greatly appreciated!

Short summary of problem
Once I get data to ponman, I am unable to view the data from a single file.

What you did
I used the code:

install.packages("devtools")
library(devtools)
install_github("mishahublog/BioArgo/ponman",ref = "ponman")
library(ponman)
extractlocation_time<- get_data2ponman(mode = "geotime",location = "indian_ocean",year = "2010",month = "02")

[1] "20100201_prof.nc\r" "20100202_prof.nc\r" "20100203_prof.nc\r" "20100204_prof.nc\r"
[5] "20100205_prof.nc\r" "20100206_prof.nc\r" "20100207_prof.nc\r" "20100208_prof.nc\r"
[9] "20100209_prof.nc\r" "20100210_prof.nc\r" "20100211_prof.nc\r" "20100212_prof.nc\r"
[13] "20100213_prof.nc\r" "20100214_prof.nc\r" "20100215_prof.nc\r" "20100216_prof.nc\r"
[17] "20100217_prof.nc\r" "20100218_prof.nc\r" "20100219_prof.nc\r" "20100220_prof.nc\r"
[21] "20100221_prof.nc\r" "20100222_prof.nc\r" "20100223_prof.nc\r" "20100224_prof.nc\r"
[25] "20100225_prof.nc\r" "20100226_prof.nc\r" "20100227_prof.nc\r" "20100228_prof.nc\r"
Do you want download all these files?

1: Yes
2: No

Selection: No
Type the file name you want to download: 20100201_prof.nc
trying URL 'ftp://ftp.ifremer.fr/ifremer/argo/geo/indian_ocean/2010/02/20100201_prof.nc'
downloaded 3.7 MB

Readprofile_1 <- ExtractBioArgo(bioarg = "20100201_prof.nc")
Error in open.nc(bioarg) : Invalid argument

What you expected to happen
I expected to be able to use the ExtractBioArgo function on my download netcdf file.

What happened
I was presented with an Error 'open.ns(bioarg): Invalid argument'

How urgent is this?
I am currently looking at BGC Argo tools, and it would be helpful to be able to add the data directly into R! Any advice you may have would be greatly appreciated.