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admixr

an R package for admixture analyses

applied_population_genetics

A textbook on population genetics

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

automate-paml-codeml

biocode

Bioinformatics code libraries and scripts

bioinformatics-cook

Perl/Python/R scripts for bioinformatics analysis

bioperl-live

Core BioPerl 1.x code

buffaloassemblyscripts

BuffaloAssemblyScripts

common_analyses

Repository of common bioinformatics scripts

common_scripts

my bin directory

datasets

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

genomics-analysis-pipeline

Some useful bioinformatics pipelines for genomics analysis

goatassemblyscripts

A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly

google-access-helper

谷歌访问助手破解版、谷歌翻墙、谷歌梯子、谷歌梯子扩展工具、谷歌商店访问、Chrome翻墙

graph-genomics-review

Pangenome graphs (review article on graph-based pangenomic methods)

gwas_script

Working on cotton resequencing

hupan

Human pan-genome analysis pipeline

mirrors-china

Mirrors and registries in China to speedup your package installation.

oneliners

Useful bash one-liners for bioinformatics.

orthomcl_tools

A couple of tools I find indispensable for post orthomcl down-stream analysis.

popgen-notes

Population genetics notes

psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

ratite-genomics

Scripts and other material for the assembly and analysis of ratite genomes.

scripts

Scripts for analysis used during the course

sheep_introgression

sho_analysis_2020

R scripts for running downstream analysis of resequencing data

standard-raxml

sv

sv_selection

Code for Yan et al., "Local adaptation and archaic introgression shape global diversity at human structural variant loci."