mingkangyang Goto Github PK

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alphafold

Open source code for AlphaFold.

alphafold-multimer

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

antigen-encoding-pipeline

Pipeline to process cytokine data, extract integral features, train a neural network, and parameterize the latent space

autodock-gpu

AutoDock for GPUs and other accelerators

basehitmodel

chemprop

Message Passing Neural Networks for Molecule Property Prediction

colabfold

Making Protein folding accessible to all!

coloc

Repo for the R package coloc

deeplearning-

✔（已完结）最全面的 深度学习 笔记【土堆 Pytorch】【李沐 动手学深度学习】【吴恩达 深度学习】

esmfold

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

hh-suite

Remote protein homology detection suite.

mlp-mixer

Implementation for paper MLP-Mixer: An all-MLP Architecture for Vision

mlp-mixer-pytorch

Unofficial implementation of MLP-Mixer: An all-MLP Architecture for Vision

nanogpt

The simplest, fastest repository for training/finetuning medium-sized GPTs.

neuralplexer-protein-ligand-

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

omegafold

OmegaFold Release Code

premut-

Accurate prediction of single-site mutation induced changes on protein structures with equivariant graph neural networks

proteinmpnn

Code for the ProteinMPNN paper

proteinnet

Standardized data set for machine learning of protein structure

pykan-kan-

Kolmogorov Arnold Networks

raptorx-3dmodeling

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

respre

ResPRE is an algorithm for protein residue-residue contact-map prediction

rifdock-

Rifdock Library for Conformational Search

saprot-

Saprot: Protein Language Model with Structural Alphabet

study

worms-

Protein Origami via Genetic Fusions

xcapt5

Protein-Protein Interaction Prediction Using Multi-kernel Convolutional Neural Networks with Protein Language Model