mikewolfe Goto Github PK
Name: Mike Wolfe
Type: User
Bio: Postdoc at UW-Madison. Interested in bacterial gene regulation, NGS data analysis, RNA biology, computer science, and statistics.
Twitter: mikebwolfe
Mike Wolfe's Projects
2018_genomeprofiling
Codes for data analysis of project "High-resolution mapping of transcriptional propensity in the Escherichia coli chromosome".
2018_lrp_chip
Code used for the analysis of Lrp ChIP-seq and RNA-seq data
2019-05-23-shapiro
bacterial_reseq
Pipeline for processing bacterial re-sequencing data
chipseq_pipeline
A general ChIP-seq pipeline to reproducibly process many samples at once.
cmarrt_python
Python implementation of the CMARRT algorithm for peak calling
lab-bookclub-rmcelreath
May 2020, Freddolino Lab book club on Statistical Rethinking: A Bayesian Course with Examples in R and Stan, by Richard McElreath
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
pygenometracks
python module to plot beautiful and highly customizable genome browser tracks
pytools3
A series of helper scripts, functions, and classes
r4dsnotes
My personal notes on the book R for Data Science
shen_h-ns_2022
sicp
My personal notes and answers to exercises in the Structured Interpretation of Computer Programs
strandedseq_pipeline
A reproducible pipeline for processing NGS data from stranded workflows including RNA-seq and NET-seq
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