Giter Club home page Giter Club logo

Comments (2)

mikerobeson avatar mikerobeson commented on September 14, 2024 2

Hi @mavino,

Would I use the files "SILVA_empv4_consensus_taxonomy.txt" as assign_taxonomy:id_to_taxonomy_fp and "SILVA_empv4_emptyrem_derep.fasta" as assign_taxonomy:reference_seqs_fp?

Yes, that looks correct.

Note that this repository has been deprecated in favor of RESCRIPt as highlighted in the README. I'd recommend using that tool, as it is much easier to download and manipulate the files as you'd like. There are more improvements to come! In fact, I'd also recommend switching over to QIIME 2 as QIIME 1 has not been supported since Jan 2018.

from make_silva_db.

mavino avatar mavino commented on September 14, 2024

Thank you so much for the quick reply...
waiting to move on qiime2 so I could use RESCRIPt...
Best.

from make_silva_db.

Related Issues (4)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.