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2017_kragel_mfc_generalizability_natneurosci

MATLAB code for identifying generalizable brain representations of pain, cognitive control, and negative emotion

attenuating_neural_threat_expression_with_imagination_2018

data to accompany neuron publication Attenuating neural threat expression with imagination (2018)

builder

complete build, test and deploy pipeline template for generating an experiment container

canlab.github.io-canlab_help_examples

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

canlab_help_examples

How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.

canlab_mkda_metaanalysis

Coordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)

canlab_psychopy_toolbox

Ease of use PsychoPy Wrappers for efficient creation of CANLab stimulus paradigms in the fMRI scanner

canlabcore

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

canlabscripts

A compilation of useful scripts commonly used in canlab

cocoancore

Core tools for Cocoan Lab

cognitive_regulation_physiology

Data and scripts for Matthewson, Woo, & Wager (in prep)

cosanlabtoolbox

General Analysis Functions

experiments

library of version controlled, tested experiments for expfactory

expfactory

software to generate a reproducible container with a battery of experiments

expfactory-experiments

version 1.0 javascript experiments that can be deployed to run in an experiment infrastructure

fmri_simulations

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

jspsych

A JavaScript library for creating and running behavioral experiments in a web browser

mediationtoolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

neuroimaging_pattern_masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.

paingen_dr

behavioral data for PainGen

paradigms_public

Publicly available canlab experimental paradigms

preprocess

All of the preprocessing code

robusttoolbox

Robust regression toolbox for neuroimaging data

tensorflowwalkthrough

wasabi-prep

code for transferring data and preprocessing