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acdc2017

acvl_utils

agent-sam

Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).

aggc2022

Automated Gleason Grading on WSI

anatomy_informed_da

attractive_simulations

basic_unet_example

An example project of how to use a U-Net for segmentation on medical images with PyTorch.

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

bodypartregression

brats2017

cmdint

CmdInterface enables detailed logging of command line and python experiments in a very lightweight manner (coding wise). It wraps your command line or python function calls in a few lines of python code and logs everything you might need to reproduce the experiment later on or to simply check what you did a couple of years ago.

coopd

dynamic-network-architectures

foundation-models-for-cbmir

generalized_yolov5

An extension of YOLOv5 to non-natural images together with 5-Fold Cross-Validation

gpconvcnp

Code for "GP-ConvCNP: Better Generalization for Convolutional Conditional Neural Processes on Time Series Data"

hd-bet

MRI brain extraction tool

help_a_hematologist_out_challenge

hyppopy

Hyppopy is a python toolbox for blackbox optimization. It's purpose is to offer a unified and easy to use interface to a collection of solver libraries.

image-time-series

Code for deep learning-based glioma/tumor growth models

image_classification

:dart: Deep Learning Framework for Image Classification & Regression in Pytorch for Fast Experiments

imlh-icml-detection-tools

iscience_gliolymph_classification

lidc-idri-processing

Scripts for the preprocessing of LIDC-IDRI data

matchpoint

MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.

medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

mednext

MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).

misalignment_da

mitk-diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

mood

Repository for the Medical Out-of-Distribution Analysis Challenge.