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MFTorresJ's Projects

assemblage icon assemblage

Tools for working with second gen assemblies, fasta sequences, etc

baltic icon baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

geonoma icon geonoma

Processing of gen-pool data from Geonoma

mauritiella icon mauritiella

Jupyter notebooks with the code for analysis and figures in Torres Jimenez et al., 2021

randomtools icon randomtools

A bunch of scripts at various stages of development/curation for solving random problems.

seqcap_processor icon seqcap_processor

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics

tuna_viz icon tuna_viz

Notebook for plotting OTU reads from diet consumed by Tuna samples

vcf2phylip icon vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

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