mennodejong1986 Goto Github PK
Type: User
mennodejong1986's Projects
darwindow
Unix and R scripts to calculate and plot population-genetic estimates on a sliding-window basis, and to perform run of homozygosity (ROH) analyses.
fastq2vcf
Pipeline for read mapping and genotype calling of multiple samples, using samtools and bcftools
mcart
Markov Chain Analysis based Reconstruction of TMCRA
microsatellitegenotypingfrombam
Pipeline to extract microsatellite genotype data from short read sequencing data.
popmsc
Pipeline for multispecies coalescent (MSC) based analyses on populations, including haploblock detection, testing the equality of alternative quartet frequencies, and 'ingroup-score' calculation
sambar
SambaR: Snp datA Management and Basic Analyses in R
vcf_pairwise_distances
Script to calculate uncorrected genetic distances between all individuals in a vcf-file.
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