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pybiomart

可以查找相应染色体或者线粒体的基因A simple pythonic interface to biomart.

pygenometracks

画不同组学、基因结果、Hic数据的图python module to plot beautiful and highly customizable genome browser tracks

quack

输入差异基因，查找关键基因Machine learning algorithm to predict biological pathway relationships based on functional genomics networks

rapmap

快速比对的软件Rapid sensitive and accurate read mapping via quasi-mapping

repsc

单细胞转录组转座子分析工具

retriever

Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data

rnachipintegrator

RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

rogue

Assessing the purity of single cell population

rscore

汤富酬课题组dongji关于细胞基于PPI聚类结果

saab_plus

salmonte

转座子的分析工具，这里没有针对单细胞SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

sars-cov-2-network-analysis

Software framework for analysis of SARS-CoV-2 molecular networks

sars-cov-2-rbd_dms

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

scanorama

2019年发表在NB上的单细胞转录组批次校正的方法Panoramic stitching of single cell data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.单细胞综合分析工具，聚类、差异、轨迹分析等等。

scanpy-batch-correct

单细胞scanpy批次校正MNNPY

scanpy_usage

Scanpy use cases.Scanpy各种使用方法示例

scatac-benchmarking

Benchmarking computational single cell ATAC-seq methods

sccancer

单细胞转录组癌症分析流程整合A package for automated processing of single cell RNA-seq data in cancer

sccatch_performance_comparison

单细胞自动化鉴定工具的评估The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database

sccut-tag

scdblfinder

Methods for detecting doublets in single-cell RNAseq data

scde

基因代谢通路或者基因集进行细胞聚类R package for analyzing single-cell RNA-seq data

sceasy

单细胞不同工具之间的格式转换A package to help convert different single-cell data formats to each other

scenic

基于转录因子的调控网络单细胞聚类工具SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

scgeatoolbox

MATLAB单细胞分析流程scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

schcl

人的单细胞图谱技术

schex

单细胞可视化工具，变成一块一块的小方块

schlacount

单细胞转录组HLA分型Count HLA alleles in single-cell RNA-seq data