mehta-lab Goto Github PK

.github

acqengj

Java-based acquisition engine for Micro-manager

aicsimageio

Delayed Parallel Image Reading for Microscopy Images in Python

dynacontrast

Image-based phenotyping of single cells using self-supervised contrastive learning

dynamorph

Learn morphological states of dynamic cells

instantpolscope-matlab

Imaging molecular order in live cells using fluorescence polarization.

micro-manager

Microscope control and image acquisition integrated with ImageJ.

micro-manager.github.io

Micro-Manager website source

microdl

3D virtual staining with 2D and 2.5D U-Nets

microlith

Image simulation for microscopy and lithography systems

mipolscope

miPolScope: rapid label-free imaging across wavelegnths

mm_meadowlarklc_opensource

Open source micro-manager adapter for Meadowlark Liquid Crystal controllers.

mmcoreanddevices

Micro-Manager's device control layer, written in C++

multisero

serological measurements from multiplexed ELISA assays

napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science

napari-glyphs

ndtiffstorage

N-dimensional, multiresolution file format for Micro-Manager

ndviewer

N-D multichannel multiresolution image viewer for Micro-Manager

octopi-research

pycro-manager

Python control of micro-manager for customized data acquisition

reconstruct-order

Label-free measurement of density and anisotropy from polarization-resolved images

recorder

3D quantitative label-free imaging with phase and polarization

tensor-visualization

Visualization of uniaxial permittivity tensors measured with polarization microscopy in 2D and 3D space

triggerscopemm

Micro-Manager-specific firmware for the TriggerScope

viscy

computer vision models for single-cell phenotyping

waveorder

Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.