mehdibehroozi Goto Github PK

adni_rs_fmri_analysis

ADNI resting-state fMRI analysis scripts

app-mrtrix3-act

Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.

change-detection-task

Change detection task code for measuring visual working memory (Matlab + Psychtoolbox)

designer

Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline

dwi_tractography

Collection of code for processing diffusion weighted MRI data (DWI) for the purposes of probabilistic tractography and other metrics

ebrains-connectivity-analysis

Connectivity analysis pipeline using EBRAINS and Nilearn.

experimentdesign_nbacktask

N Back working memory task, coded with the help of the Matlab Psychtoolbox. A number of difficulty levels included.

fba_paper

A repository of code used in Shannon Kelley's paper "Age-related differences in white matter: Understanding tensor-based results using fixel-based analysis"

fibernavigator

The original Fibernavigator: tool for vizualization of DTI and MRI data

flicker_stimulator

SSVEP Stimulator using MATLAB and Psychtoolbox

fmri

MATLAB scripts for analysis of fMRI data

fmri-analysis-course

Materials from fMRI data analysis course for cognitive science students.

fmri-classification-example

example of classification using n-back task data from myconnectome

fmri_data_analysis

Python code explaining how to display structural and functional fMRI data.

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

go-nogo-rarego

Go-Nogo cognitive assessment made using MATLAB and psychtoolbox

hcp-diffusion-dcm

Scripts used in Experiment 2 of my PhD, using tractography and DCM on the HCP dataset

ica-aroma

ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

imprinting-fmri

independent_component_analysis

From scratch Python implementation of the fast ICA algorithm.

lectures_on_neuroimaging

motion_th

Motion direction discrimination threshold measurements with Psychtoolbox

mri-preprocessing-pipeline

MRI preprocessing pipeline

nilearn

Machine learning for NeuroImaging in Python

nilearn-task-networks

Tutorials for task-based activation and network analysis using Python based modules: Nilearn and Nistats. Notebooks prepared on Neurohackademy 2018 (http://neurohackademy.org/).

nilearn.github.io

Web page for Nilearn: NeuroImaging with scikit-learn. This is generated

nipy

Neuroimaging in Python FMRI analysis package

nistats

Modeling and statistical inference on fMRI data in Python

pigeon_fmri

poldracklab-base

Repo for general-purpose code in the poldrack lab