Related Issues (20)
- fail gracefully if files are not accessible HOT 3
- Process customisation
- Keep amrfinder output
- Investigate regex for reads
- Tidy up directory
- Check mlst
- Partition out tasks
- Substitute panaroo for roary
- Too many columns for mlst when duplicate alleles are foun
- Thread pool reached error HOT 1
- Remove alert from iqtree
- Bohra fails with no params
- Which is the real Bohra repo?
- Clarify babykraken is not actually "useful"
- Add DOI and PMID for all tools used
- Annotation module for 'bakta' HOT 1
- There is something wrong with your reference file. Valid file types are .fasta, .gbk, .fasta.gz, .gbk.gz. Please check your inputs and try again. HOT 2
- "altair" Python package missing from bohra conda recipe ?
- Containerized Bohra installation HOT 1
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