Name: Minh Duc Cao
Type: User
Company: Tandem AI
Bio: Head of Data Science @TandemAI, former ML Scientist at Gritstone Bio and QuantumSi. Interested in Deep Learning, Information Theory and Bioinformaics
Location: Boston, MA, USA
Blog: https://www.linkedin.com/in/minh-duc-cao-7b342313/
Minh Duc Cao's Projects
An E(3) Equivariant Variational Autoencoder for Molecular Linker Design
Minimal examples of data structures and algorithms in Python
Implementation of Alphafold 3 in Pytorch
Antimicrobial Resistance Analysis
TensorFlow - A curated list of dedicated resources http://tensorflow.org
Message Passing Neural Networks for Molecule Property Prediction
A generative model for programmable protein design
Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.
CReM: chemically reasonable mutations framework
Public facing notes page
Speed virtual screening by 50X
Interactive deep learning book with code, math, and discussions. Available in multi-frameworks.
Molecular Manipulation Made Easy.
Official repository for the Deep Docking protocol
source code for deppHop
A deep learning package for many-body potential energy representation and molecular dynamics
Python package for graph neural networks in chemistry and biology
A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.
The deep potential generator
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
DNA foundation modeling from molecular to genome scale
Explainer for black box models that predict molecule properties