mcavallaro Goto Github PK

basiccpp

Basic course in C/C++

bookletise

The smartest way to page a pdf file for booklets.

ch925

cloning

Python implementation of the cloning algorithm for the computation of large deviation functions.

covidc

Software supporting M. Cavallaro, et al., Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values. PLoS Comput Biol 17(6): e1009121 (2021) https://doi.org/10.1371/journal.pcbi.1009121

crtsb

dtasep-fit

Software supporting M. Cavallaro et al. "Bayesian inference of polymerase dynamics over the exclusion process" (2021) arXiv/2109.05100

dtasep-wasep

gloop

Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5

inverse-laplace-transform

C link to FORTRAN 77 routine 662 for the inversion of Laplace transforms

mcavallaro.github.io

Massimo's personal website

ml4amr

Software supporting M. Cavallaro, et al., Informing antimicrobial stewardship with explainable AI. PLOS Digit Health 2(1): e0000162 (2023) https://doi.org/10.1371/journal.pdig.0000162

monkeypoxuk

Some code for monkeypox

outbreak-detection

Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https://doi.org/10.1371/journal.pcbi.1010726.

pymc

PyMC: Bayesian Stochastic Modelling in Python (for PyMC3: https://github.com/pymc-devs/pymc3)

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

rancovr

rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing

sars-cov-2-spatiotemporal-surveillance

R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.

shap

A game theoretic approach to explain the output of any machine learning model.

tv-pro-seq

scripts for TV-PRO-seq

ufuncs

zeroclickinfo-goodies

DuckDuckGo instant answer plugins based on Perl functions

zeroclickinfo-spice

DuckDuckGo instant answer plugins based on JavaScript APIs