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Type: Organization
Merge and process multiple human 3' UTR datasets
Merge and process multiple mouse 3' UTR datasets
Pipeline to count reads in curated 3'-end mm10 peaks
scUTRquant analysis of Genome-Wide Perturb-Seq dataset
Preprocesses Human Cell Landscape metadata and analyzes `hcl-utrome` final outputs
generates human UTRome from Human Cell Landscape data
kallisto benchmarking of multi-UTR quantification for 3'-end tag-based RNA-seq
Preprocesses Mouse Cell Atlas metadata and analyzes `mca-utrome` final outputs
3' UTR cleavage site identification from the Mouse Cell Atlas
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
Scripts used to generate figures for the scUTRquant manuscript
Input definitions for the scUTRquant pipeline
Reprocesses SLAM-seq data from K562 using MWS UTRome
Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020
Computational analysis for Horste et al., Mol. Cell, 2023
Peak Width Analysis of the Tabula Muris Libraries
Snakemake pipeline for generating truncated transcriptome annotations with txcutr
QAPA pipeline for enhancer-related RNA-seq datasets
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Data-Driven Documents codes.
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