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mayrlab's Projects

atlas-hs icon atlas-hs

Merge and process multiple human 3' UTR datasets

atlas-mm icon atlas-mm

Merge and process multiple mouse 3' UTR datasets

gwps-sq icon gwps-sq

scUTRquant analysis of Genome-Wide Perturb-Seq dataset

hcl-analysis icon hcl-analysis

Preprocesses Human Cell Landscape metadata and analyzes `hcl-utrome` final outputs

hcl-utrome icon hcl-utrome

generates human UTRome from Human Cell Landscape data

kallisto-overlap icon kallisto-overlap

kallisto benchmarking of multi-UTR quantification for 3'-end tag-based RNA-seq

mca-analysis icon mca-analysis

Preprocesses Mouse Cell Atlas metadata and analyzes `mca-utrome` final outputs

mca-utrome icon mca-utrome

3' UTR cleavage site identification from the Mouse Cell Atlas

scutrquant icon scutrquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

sommerkamp20 icon sommerkamp20

Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020

tiger-seq icon tiger-seq

Computational analysis for Horste et al., Mol. Cell, 2023

txcutr-db icon txcutr-db

Snakemake pipeline for generating truncated transcriptome annotations with txcutr

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