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followers: 215.0 following: 289.0 repos: 73.0 gists: 6.0

Name: Maxime U Garcia

Type: User

Company: @seqeralabs

Bio: Bioinfomagician designing pipelines @seqeralabs | @nf-core

Twitter: gau

Location: Stockholm

Blog: https://maxulysse.github.io/

👋 Hi there 🧑‍💻

I'm a bioinformatician, from Marseille 🇫🇷 , working in Stockholm 🇸🇪 for @SeqeraLabs in 🇪🇸
I'm interested in Reproducible Research (and obviously open-source), Cancer, Automation, Containers, Data Integration, Visualization and much more...
I enjoy doing pipelines with Nextflow, that are reproducible using Conda, Docker, Singularity... and can run anywhere, including AWS, GCP, Azure...
I'm part of the core team that administrates the @nf-core community

My Github stats 📊

🔎 Find me around the web 🌎

I share the occasional blog post and my presentations on my own Jekyll website
I sometimes share informations on LinkedIn
I keep track of my publications with ORCID and Google Scholar
I μblog, but mainly RT on Twitter or Mastodon
I share food and cats pictures on Instagram with sometimes an occasional landscape

Maxime U Garcia's Projects

aws-igenomes

Documentation and description of AWS iGenomes S3 resource.

aws-igenomes-build

Building script for AWS-iGenomes

caw-references

References files for CAW

compile-latex

Simple beamer/latex compiler using Nextflow, provided with Docker container

conferencecoverage

Twitter Conference Coverage analysis from hastag using R-project

courses

jsalignon_cactus

Chromatin ACcessibility and Transcriptomics Uniting Software

mastodon-bioinformatics

Most simple webapp to bulk follow bioinformatics accounts on Mastodon.

maxulysse

My own GitHub Profile README

maxulysse.github.io

My own jekyll personnal website >>>

multi-package-containers

Testing building mulled containers for multi-requirement tools.

my_memes

my own memes

my_setup

Own guide to set up new computer

my_zsh

mycv

my CV made with compile-latex

myicons

Minimalist icons in SVG format for social websites

myownthesis

My own thesis made with myThesis template

mythesis

LaTeX Thesis Template

natir_variantplaner

A tool kit to manage many variant on desktop computer

nbisweden_workshop-reproducible-research

nextflow

A DSL for data-driven computational pipelines

nextflow-workflow-catalog

A statically generated catalog of available Nextflow workflows

nextflow_3500

nextflow_map_in_map

nextflow_params_opt

nf-core_ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

nf-core_atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

nf-core_bamtofastq

Converts bam or cram files to fastq format and does quality control.

nf-core_chipseq

main repo: https://github.com/nf-core/chipseq

nf-core_configs

Main repo:

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