Comments (3)
LeilyR
commented on September 4, 2024
OK I found the bug, it is coming from here
Filtering is only defined for bowtie2 not others. I will fix it in my locally installed one. Shall I send you a PR too?
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LeilyR
commented on September 4, 2024
I reopened this, since it is actually a bug to be fixed. Noticed that I cannot set a label anymore :P so maybe one of you can take care of that.
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katsikora
commented on September 4, 2024
Hey Leily,
thanks for posting that issue. I've been mostly testing on bowtie2 which is the default aligner, but I agree we should fix that.
I'm only aware that UMI deduplication only works for bowtie2 sofar, this is also to be fixed for other aligners.
Were you able to open a PR?
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