matthuska Goto Github PK

biasviz

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.

bioconda-recipes

Conda recipes for the bioconda channel.

cmbr2

CMB R Scripts

conda-move

Move environments from an existing conda installation to another directory

dataserver

Zotero Data Server

dot-nvim

My ~/.config/nvim directory

dot-vim

My .vim directory

high_res

High Res was a nice theme for Tumblr.

jenkins-test

A tiny test repo for testing out Jenkins

motifcounter

mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

nvim-minimal-tree-sitter

A minimal neovim config for installing a custom tree-sitter parser

nvim-nvchad

My neovim setup using NvChad

obsidian-templates

My Obsidian templates. Hopefully up to date, probably not.

predict-nmi

Predict non-methylated genomic regions by training a spectrum kernel SVM on known non-methylated regions

pubmed2html

Command line tool to do a PubMed query and return the results as nicely formatted HTML

r-optparse

R package providing a commandline optional argument parser

smfc-x9sci

Super Micro Fan Control (fork to work with X9SCI)

snakesrt

Sort rule parameters in Snakemake files

tout

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

transit

Science Hack Day Berlin 2015: Physical Transit Visualization

trap

R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences

tree-sitter-nextflow

Tree sitter parser for nextflow

tree-sitter-nextflow-config

Nextflow config file grammar for tree-sitter

tree-sitter-snakemake

Snakemake grammar for tree-sitter

tumblr-photoblog

Tumblr Photoblog Tools

zoo-for-zotero

This is an Android app for viewing Zotero libraries.

zotero

Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources.

ztpi

STATE Festival Berlin 2014: Time Bureau