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bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio_docker

Automated Docker builds for bcbio

besolverd

Small python (2.7) script which encapsulates mosdepth, bedtools and rtg tools for our benchmarking.

bioconda-recipes

Conda recipes for the bioconda channel.

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

conda-forge-staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

eido-feedstock

A conda-smithy repository for eido.

elprep

elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.

igv.js

Lightweight html5 version of the Integrative Genomics Viewer

janis-bioinformatics

Repository of bioinformatics tools for the pipelines module

loginpass

Social connections powered by Authlib.

maxentscan

MaxEntScan source code, copied from http://genes.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html

meinheld-gunicorn-docker

Docker image with Meinheld managed by Gunicorn for high-performance WSGI (Flask, Django, etc) web applications in Python 3.7 and 3.6 with performance auto-tuning. Optionally with Alpine Linux.

mulled

Mulled - Automatized Containerized Software Repository

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

nextflow

A DSL for data-driven computational pipelines

nf-core-demultiplex

UNDER CONSTRUCTION: Demultiplexing pipeline for Illumina sequencing data

nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-saliva

nf-core-tools

Python package with helper tools for the nf-core community.

peppy-feedstock

A conda-smithy repository for peppy.

ubiquerg-feedstock

A conda-smithy repository for ubiquerg.

uvicorn-gunicorn-docker

Docker image with Uvicorn managed by Gunicorn for high-performance web applications in Python 3.7 and 3.6 with performance auto-tuning. Optionally with Alpine Linux.

vcf2db

create a gemini-compatible database from a VCF