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bolteau_phd_thesis_supplement

Supplement of the Mathieu Bolteau's PhD Thesis Manuscript

caspo

Reasoning on the response of logical signaling networks with Answer Set Programming

contavect

Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data

glog-project

Repository for the software engineering project during the second year of the Master of Bioinformatics at the University of Bordeaux.

iggy

:arrow_upper_right: Influence graph analysis, consistency check, diagnosis, repair and prediction

lesminimesenunclic_application

OOP project of the second semester of the M1 Bioinformatics Master at University of Bordeaux

m1_pdp_project

Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.

mathieubolteau.github.io

menetools

MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.

notebooks

This repository collects notebooks for the course

obi

Homework - Jukes Cantor DNA Evolution Model

overfitting_in_ml

Notebook to present overfitting using diabetes dataset.

personal-website

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

predator

projet_ia

Identification d’ensembles de gènes par programmation logique

pybravo

quade

Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)

scrna2boni

scRNA2BoNI - A general framwork to infer Boolean networks from scRNAseq data.

seedtaag

SeedTaag is a package for visualizing and performing topological measurements on metabolic networks

sekator

Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)

ssv-coverage

Coverage graph creator from BAM files (included in the SSV-Conta package)

test_jupyter_online

test_repo