mary-alegro Goto Github PK

avid_pipeline

Code for the imaging pipeline described in "Deep Learning Based Large-scale Histological Tau Protein Mapping for Neuroimaging Biomarker Validation in Alzheimer’s Disease"

berkeley

The Hacker Within at the University of California - Berkeley

caffe_tutorial_thw

Tutorial on CNNs with Caffe presented at Berkeley Institute for Data Sciences The Hacker Within

image_registation_imagexd

Tutorial on affine image registration basics presented at the ImageXD 2019

img_intro_mac

Material for the Introduction to Image Processing lecture presented at the UCSF Memory and Aging Center

itkutils

ITK 3d image manipulation tests. Some of them are broken, use at your own risk.

keras-cam

Keras implementation of class activation mapping

largeslidescan

Control software for the slide scanner described in "Deep Learning Based Large-scale Histological Tau Protein Mapping for Neuroimaging Biomarker Validation in Alzheimer’s Disease"

matplotlib

matplotlib: plotting with Python

neuralsynthesis

Neural render is a tool for repairing poorly rendered 3d scenes

tau_segmentation

ucsfcellcounter

Source code for my "Automating Cell Detection and Classification in Human Brain Fluorescent Microscopy Images Using Dictionary Learning and Sparse Coding" paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5600818/)