can not found gfa_sort function in sort.py about gaftools HOT 4 CLOSED

Hello,

I added the script for gfa sorting in the new commit. Give the indexing a try with the latest commit.

Regards,
Samarendra

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Hi Samarendra,

Thanks for your help, now I can run indexing without the above errors. But what bothers me now is how to obtain the rgfa format file. I tried to use the vg convert command but the gfa obtained does not contain the rgfa tags. I would like to ask how you generally convert it.

Many Thanks!

Yumin

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minigraph is the most well known tool to create rGFA format pangenomes.

I maintain a list of software here, as there are other tools which do this too.

https://github.com/colindaven/awesome-pangenomes

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A GFA to rGFA converter seems like a good idea. This toolkit was developed keeping the HPRC minigraph rGFA in mind. But it makes sense to make a GFA to rGFA converter to allow a broader range of utility. The converter might already exist as part of gfatools (not sure).

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