markdunning Goto Github PK

2017-07-19-galaxy-workshop

2017-10-12-oxford-swc

alignedreads

Workshop on dealing with aligned sequencing reads

alignment-demo

Shiny app to demonstrate

annotate-and-filter

annotatiing and filtering variants

annotation-hack

attempt at automated methods for (re-)annotation of microarrays in Bioconductor

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbiornaseq

R package for bcbio RNA-seq analysis.

beadarray

Quality Assessment, processing and analysis of Illumina microarray data

beadarray-devel

Developmental copy of beadarray

beadarrayusecases

Package for PLoS eductional paper describing Illumina BeadArray analysis

bioc-intro

A practical to refresh knowledge of R and introduce Bioconductor classes

bioc-intro-talk

talk on the basics of Bioconductor and data analysis

biocbasics

blenditbayes

Code used in my blog "Blend it like a Bayesian!"

build-annotation-packages

R code to build the Illumina annotation packages for Bioconductor release

cambrweb

Cambridge R User Group web site

chip-seq-training-course

Materials for chip-seq training course in Galaxy and R

covid19_plots

trying to recreate some plots I saw on BBC news

cruk-autumn-school-2017

CRUK Bioinformatics Workshop September 2017

cruk-summer-school-2016

Analysis of Cancer Genomes

crukcimisc

Various shortcuts for common plotting operations and colour palettes based on Cambridge University and Cancer Research Uk branding

cytoscape_course

This is a basic cytoscape course intended for beginners to get training with biological network analysis.

datapackages

Building and checking data packages for Bioconductor

dimendtp_datamanagement

docker-mutation-demo

Docker container to run the demo for the Science Festival

docker-overview

eurobioc2017

European Bioconductor Meeting 2017

football_rivals

A fun shiny app to compare results and league positions between two football teams using historical data

friendly-github-intro

This is a beginner friendly introduction to making open, version-controlled, and collaborative projects using Github.