marcelzwiers Goto Github PK
Name: Marcel Zwiers
Type: User
Company: Radboud University Nijmegen
Bio: Staff scientist
Location: Nijmegen, The Netherlands
Marcel Zwiers's Projects
argparse-manpage
Automatically build man-pages for your Python project
ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
didi
Donders Institute Diffusion Imaging (DIDI) toolbox
duecredit
Automated collection and reporting of citations for used software/methods/datasets
fmriprep_sub
Utilities for using fmriprep on the DCCN compute cluster
mb
Support for CMRR multi-band pulse sequences
mriqc_sub
mriqc_sub.py is a wrapper around mriqc that queries the bids directory for new participants and then runs participant-level mriqc jobs on the compute cluster. If the participant-level jobs have all finished, you can run the group-level "mriqc bidsdir outputdir group" command to generate group level results (the group level report and the features CSV table)
neurocommand
A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging
neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
pet2bids
PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
spec2nii
Multi-format in vivo MR spectroscopy conversion to NIFTI
transparent-singularity
Deploying a singularity container so that it behaves like one would have installed software natively
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