marcalva Goto Github PK
Type: User
marcalva's Projects
allelecounter
ambimux
single cell demultiplexing
ambisim
single-cell multiome multiplex and ambient simulator
bisque
An R toolkit for estimation of cell composition from bulk expression data
bulk-rna
Pipeline to process bulk RNA-seq data
diem
Clean up single-cell data
diem2019
Analysis for DIEM method
dna_scripts
docker_recipes
Docker recipes
genomicslibrary
ggplot_wrappers
ggplot wrapper scripts
go_enr
Calculate gene set enrichments based on gene ontologies
hcc_sc_2022
HCC single cell analysis for Alvarez, Benhammou et al.
howto
Build recipies and other howtos
mergevcf2panel
Merge VCF with a reference panel
nvim_config
dot files for nvim
rna_var_call
Scripts for variant calling from RNA-seq data
rnaseq_scripts
RNA-seq scripts
sc_quant
Count reads from single-cell data
seurat
R toolkit for single cell genomics
single-cell
Scripts for single-cell analysis
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