Comments (3)
It appears as though the answer is that you need to remove the header, but you can run the ANGSD FST calculation after doing so.
from winsfs.
Hi Chris,
Sorry for the slow reply.
I haven't used the Fst stuff in ANGSD for a while, so I'm not sure about the details, but as you say, the output format of winsfs is the same as the one used in ANGSD, except it adds a header with the dimensions. So if all you need is an estimate of the SFS, you should be good to go by just removing the header.
from winsfs.
Apologies for taking so long to respond! This worked and I greatly appreciate the support.
from winsfs.
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from winsfs.