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mahsa106's Projects

bg-atlasapi icon bg-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

brainj icon brainj

Fiji pipeline for automated serial section reconstruction and mouse brain analysis.

brainrender icon brainrender

a python based software for visualization of neuroanatomical and morphological data.

clearmap2 icon clearmap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

graphnics icon graphnics

Data structures and models for solving flow equations on networks

morphapi icon morphapi

Apis to download neuronal morphologies from publicly available datasets

simvascular icon simvascular

A comprehensive opensource software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

vessap icon vessap

Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning

zotero-dark-theme icon zotero-dark-theme

userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.

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