Comments (5)
:)Hey man, It seems to be no reply here.
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@lschctt @chenhao1208 any update on the missing data?
from pathomicfusion.
Hi @lschctt @chenhao1208 @nauyan - sorry for the delay in response.
Is the data not in ./TCGA_GBMLGG/all_st_cpc_img/pt_bi/
?
from pathomicfusion.
@Richarizardd the data is in ./TCGA_GBMLGG/all_st_cpc_img
. However, the data is missing in the ./data/TCGA_GBMLGG/all_st_patches_512_cpc
directory.
from pathomicfusion.
As mentioned in the README, the all_st_cpc
and all_st_patches_512_cpc
are the same folders which you should copy-paste. I will clarify this further in the README, so that it will reflect more accurate folder names.
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Related Issues (20)
- Reproducibility of the GBMLGG results HOT 2
- Regarding reprudicing the same result of pathomic fusion HOT 2
- About the CIndex HOT 1
- Regard reproducing the GBMLGG grade calssification HOT 6
- CPC training HOT 2
- CPC_model checkpoints missing HOT 2
- TypeError: scatter_mean() takes from 2 to 5 positional arguments but 6 were given HOT 12
- How does the loss function for grade task work (CNN-only)? HOT 3
- Segmentation fault (core dumped)
- Is the molueculare subtype feature included in the Grade classification task? HOT 4
- The generation of pkl files HOT 2
- Validation data is same as testing data?
- TypeError: scatter_mean() takes from 2 to 5 positional arguments but 6 were given HOT 1
- About the pkl files HOT 3
- options.py HOT 1
- KNN for Cell Graph Construction HOT 1
- Regard reproducing the GBMLGG survival prediction HOT 2
- could not find MaskCNN and resnet_custom HOT 2
- Data cannot be downloaded HOT 1
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