Comments (2)
I believe there is a function inside the epGUI code that does this, namely attachAlleleFrequenciesToPedigree.familias
. It takes a pedigree ped
and a file path path
and attaches the frequency data found in the file at path
to the pedigree ped
. I tested it with the sample files that @thoree provided for epGUI and it appeared to work fine.
Something we could do is move just this function to the main forrel
branch so that it is available even though the epGUI is still not ready. I can create a new branch and incorporate this function to say R/readFam.R
.
Here is the link to the file that contains the function: https://github.com/magnusdv/forrel/blob/shiny-gui/inst/exclusionPowerUI/importAdapters/familias-import-adapter.R#L20
from forrel.
This functionality is now implemented in pedtools::readFrequencyDatabase()
.
from forrel.
Related Issues (20)
- `markers` problem in `missingPersonIP`
- EP: mutation only possible toobserved alleles HOT 2
- Missing error in `profileSim` HOT 1
- Marriage loops and `markerSim` HOT 3
- Warnings from shownInTriangle HOT 1
- readFam HOT 1
- readFam problem HOT 2
- readFam contd HOT 2
- `readFam` and twins HOT 1
- `markerSim()` error in inbred pedigree
- kinshipLR HOT 1
- `exclusionPower` and `founderInbreeding` HOT 2
- kinshipLR problem HOT 2
- `profileSim` for list of singletons HOT 1
- LRpower output
- 'ids' argument in showInTriangle HOT 1
- `checkPairwise()` fails when exactly two individuals are typed
- kinshipLR complains about missing linkage map HOT 1
- Error in missingPersonLR or profileSim in forrel v1.5.0? HOT 5
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from forrel.