Michael Duprey's Projects
Course website for Math 721: Homotopy Type Theory, taught at Johns Hopkins in Fall 2021
Exercise solutions for ch. 1-3 of Emily Riehl's Category Theory in Context
GitHub repository for the ICLR Computational Geometry & Topology Challenge 2021
Docker image for the molecular visualization program, UCSF ChimeraX
Explore topological changes across protein conformational changes
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
Interactively view delay embeddings in R^3
Dynamic time warping and calculation of optimal warp path
Julia library for homological persistence
Infix operator for integral inner product and implementation of Gram-Schmidt process
Config files for my GitHub profile.
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
A python package for computing Persistence Curves
Persistent homology across protein conformational changes
Energy-based models for atomic-resolution protein conformations
Protein classification with deep learning and boosted trees using topological features
Flexible and efficient persistent homology computation.
An implementation of the Smith normal form algorithm for decomposition of finitely generated modules over a PID