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2d-arn-quantification

Tools for ARN quantification in 2D. Written in Matlab.

2ndtourbenin

2nd tour des élections au bénin

arncoloc

eRNA, mRNA colocalization and quantification tools

arnquant

2D quantification of RNA from Fish experiment, using different algorithms (in matlab)

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

baal-feedstock

A conda-smithy repository for baal.

biopython

My fork of the Biopython git repository

bootcamp

The bootcamp for Milvus, including benchmarking, solutions, and application scenarios.

c3po

Experiment with Conformal Prediction

computecorr

crewai

Framework for orchestrating role-playing, autonomous AI agents. By fostering collaborative intelligence, CrewAI empowers agents to work together seamlessly, tackling complex tasks.

d3ipyplus

Using d3plus in jupyter notebook

dagviz

directed graph visualisation

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

dscribe

DScribe is a python package for creating machine learning descriptors for atomistic systems.

eg

Useful examples at the command line.

ete

ETE (Environment for Tree Exploration) is a python toolkit intended for tree analysis and visualization. It provides both a comprehensive API to manipulate and operate with trees in a programmatic way, as well as a number of command line tools to easily compare, annotate, modify or render tree images. ETE is currently developed as a research tool in the context of genomics and phylogenetics, providing several specific modules for orthology and paralogy prediction, NCBI taxonomy queries, multiple sequence alignment integration and more.

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

exmol

Explainer for black box models that predict molecule properties

faiss

A library for efficient similarity search and clustering of dense vectors.

fastmoe

A fast MoE impl for PyTorch

fisherexact

Fisher exact test for mxn contingency table in python

flibityboop

An android Movie and TV Show manager

genomenews

A news.ycombinator.com clone for genomic news.

github-issue-templates

:symbols: A collection of GitHub issue and pull request templates

graphormer-pretrained

Packaging of Graphormer, a deep learning package that allows researchers and developers to train custom models for molecule modeling tasks. It aims to accelerate the research and application in AI for molecule science, such as material discovery, drug discovery, etc.

gym-soccer

intensitysum

Background subtraction and ARN intensity sum for each nucleus after a fish experiment

intro-linux

Introduction to linux for Franz lab

jekyll-fresh

Jekyll port of the Fresh Theme