Comments (1)
If it is happening for GSE121380, which has 13 samples memory should of course not be the problem. The problem here is that the samples are very large single cell studies with 300+ million reads. ARCHS4 is currently not optimized to align single cell data and has most likely failed to align these samples in the updated pipeline. They are not in the newest ARCHS4 data release. We hope to be able to support them again in the future.
To check the variable sample_locations should not be empty.
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Related Issues (20)
- Difference between human_correlation.rda and human_correlation_archs4.f? HOT 2
- Updating R Scripts with New h5 Matrices HOT 1
- Metadata info HOT 5
- Update blurb on the landing page HOT 1
- Meta data HOT 3
- Latest pipeline to create ARCHS4 Version 2.1.2 h5 files? HOT 1
- elysium HOT 9
- Programmatic way to submit fastq files HOT 1
- gene counts format HOT 1
- RequestTimeout
- ENSG genes when using gene_symbols HOT 3
- [Question]: License page clarificaion HOT 2
- CPM and TPM from gene_abundance.tsv HOT 1
- Fix the footer HOT 2
- Duplicate gene symbols HOT 2
- Some questions regarding h5 files HOT 1
- What gencode version for 'human_matrix_v1.11.h5' gene name annotation? HOT 1
- Duplicate Gene Names Implications? HOT 1
- Gene correlation files on the site HOT 6
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