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2021study_webapp

My first Streamlit APP

3deecelltracker

A python algorithm for tracking cells in 3D time lapse images.

capture

edgepy

A Python implementation of edgeR for differential expression analysis

fasta_filter

followme

go_subtractor

A ebiten-base imagesubtractor for C. elegans motion detection

image-subtractor-java

A image subtractor that implement by Java and Opencv-Java

imagesubtractor

An image subtractor GUI for C. elegans movement

japaripark-game

A tiny text game for managing a zoo.

kcd_utils

limaps

A python package for analyzing nematode lethargus and inter-molting behavior

mmcoreanddevices

Micro-Manager's device control layer, written in C++

mwt-capture

neuropal_id

Research software for (semi-) automated detection and identification of neurons in images of NeuroPAL, extract ID’d neural activity traces from NeuroPAL;GCaMP animals, and upload these datasets to public repositories. DOI: 10.1016/j.cell.2020.12.012

neuropeptide-connectome

Scripts to run the analysis shown in the paper https://www.cell.com/action/showPdf?pii=S0896-6273%2823%2900756-0

open-worm-analysis-toolbox

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

pyabf

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

pyroi

A simple roi selector built by python-opencv

qa_cli

rascam

Rust library for the Raspberry Pi Camera

reveal.js

The HTML Presentation Framework

sleepstage

A reconstruct for sleepstages

sleepstages

soustraire

A Rust implementation of imagesubtractor

wormtracer

Automatic worm centerline tracer, WormTracer