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16s-dada2

Snakemake pipeline for amplicon sequencing using dada2

autophagy-in-cancer

autophagy in cancer

circosjs

d3 library to build circular graphs

cytoscape.js-cola

The Cola.js physics simulation layout for Cytoscape.js

cytoscape.js-panzoom

Panzoom extension for Cytoscape.js

dash-bio

Open-source bioinformatics components for Dash

diversity-tcr-seq

docker-ukbiobank-utils

Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

echarts2shiny

To insert interactive charts from ECharts into R Shiny applications (在R Shiny app中插入ECharts可交互图形)

gatk3-4-rnaseq-germline-snps-indels

Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools

geomnet

:exclamation: This is a read-only mirror of the CRAN R package repository. geomnet — Network Visualization in the 'ggplot2' Framework. Homepage: http://github.com/sctyner/geomnet Report bugs for this package: https://github.com/sctyner/geomnet/issues

jquery-steps

A powerful jQuery wizard plugin that supports accessibility and HTML5.

microbiome

Microbiome research

psw

:exclamation: This is a read-only mirror of the CRAN R package repository. PSW — Propensity Score Weighting Methods for Dichotomous Treatments

qiime2_16s_asv_protocol

qiita

Qiita - A multi-omics databasing effort

rna-seq-fusion

rna-seq_circrna

rna_seq

RNA-Seq Expression

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

scrna-seq-pipelines

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

singlecellmtdna

Single Cell mtDNA sequencing bioinformatics. Contact [email protected]

tcga

Microbial analysis in TCGA data

tcga_rebuttal

Re-analysis of data provided by Gihawi et al. 2023 bioRxiv

test

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

useful-scripts

common useful script