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ansible-galaxy-cluster

Ansible role for installing galaxy on a node connected to a cluster.

ansible-role-galaxy_docker

ansible-role-xwiki-docker

Ansible role for setting up an xwiki instance that is powered by a docker stack.

argalaxy-immunerepertoire

Argalaxy Immune Repertoire pipeline

array-as-vcf

bioconda-recipes

Conda recipes for the bioconda channel.

cactus

CACTUS: Clonal Architecture of genomic Clustering of TUmor Single cells

cactus-data

Data of manuscript: "CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells"

dgeanalysis

R package with Shiny application for DGE analysis

directus-manager

django

The Web framework for perfectionists with deadlines.

django-fsm

Django friendly finite state machine support

docker-galaxy-compose

A basic galaxy container for docker-compose setups. Includes a conda installation.

docker-galaxy-uwsgi

docker-pysam-tqdm-debian

Container with pysam, tqdm on python 3.7 on debian stretch

docker-singularity-snakemake

Docker image based on debian:buster that includes both singularity version 3 and snakemake 5.4

docker_ubuntu_gridengine_drmaa

For building a docker image on Ubuntu with Grid Engine, DRMAA, and miniconda installed.

efds

Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.

efds_db

Essentials for Data Science: 3*4h course on relational databases

fairdatapoint

Fork of the FAIR Data Point repository, collecting changes and issues with the FDP implementation at the LUMC.

fastq-filter

A fast FASTQ filter program.

fastqsplitter

Splits fastq files evenly

fhir-client

very basic FHIR client used send data to a FHIR-endpoint (used by github.com/LUMC/fhirhose )

fhirhose

freebayes-snakemake

Short read pipeline using bwa-mem2, freebayes and whatshap to call phased variants

galaxy-launcher

A project to launch the galaxy docker image easily using ansible

gene-coverage

A program to calculate coverage per feature over one or more samples.

git-synchronizer

A python program that will mirror git repos by automated push pulling

gitlabhq

Project management and code hosting application. Follow us on twitter @gitlabhq

gnomad-merge

Snakemake pipeline to merge gnomAD VCF files