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asap

A scalable bacterial genome assembly, annotation and analysis pipeline

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

bootstrap-5-autocomplete

autocomplete/typeahead js plugin for bootstrap v5

cloud.image.cwlab

cwlab

An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface

dbxref

Resolve und retrieve database cross reference data used in bioinformatics databases

densitymap

DensityMap is perl tool for the visualization of features density along chromosomes

docker.sphinx

Recipe for docker image that contains sphinx and plugins

docker.ssh

Docker image with ssh client in it

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

evaluate_funannotate

Sample workflow that performs the steps from the funannotate tutorial on the publically available data for P. cubensis.

fastaqc

Fasta checker tool

fastqc-pipeline

Sample pipeline that uses fastqc for the analysis of one or multiple fastq files. For teaching purposes

feature-viewer

Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project

gffhelpers

Helper scripts to handle genome annotation in gff format

grails-spring-security-shiro

helm

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

joplin

Joplin - an open source note taking and to-do application with synchronisation capabilities for Windows, macOS, Linux, Android and iOS.

lukasjelonek.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ncbi_genomes_update

Script to sync ncbi genomes to a local directory

nextflow

A DSL for data-driven computational pipelines

nextflow-download-public-data

#nfhack18 project to prototype automatic downloading of remote data based on accession numbers

nextflow-dsl-migration-example

nextflow-s3fs

An S3 File System Provider for Java 7

pktriggercord

Remote control for Pentax DSLR cameras

sequencing-technology-usage-diagram

Visualisation of sequencing platform data in SRA over the time

vertx-codegen

Vert.x code generator for asynchronous polyglot APIs

vertx-examples

Vert.x examples

vertx-junit5

Testing Vert.x applications with JUnit 5