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LucaSC's Projects

idmb_scimitar icon idmb_scimitar

Repo for Imputed Diffusion Map Branching Scimitar trajectory inference method

louvainpy icon louvainpy

Implementation of Louvain algorithm in Python without graph libraries dependencies. For educational purposes.

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scorect icon scorect

scoreCT: Automated Cell Type Annotation

scvi-tools icon scvi-tools

Deep probabilistic analysis of single-cell omics data

starfish icon starfish

*fish -- A standardized analysis pipeline for image-based transcriptomics

traj-formats icon traj-formats

Format specifications for communicating trajectory information.

vega icon vega

VEGA: VAE Enhanced by Gene Annotations

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