lolab-msm Goto Github PK

aearm_cell_viability_calibration

anrm

Apoptosis-Necrosis Reaction Model

anrm_official

aws_helpers

Scripts, templates, etc. for AWS

bayes-mmi

bayessb

Bayesian model inference and parameter estimation for biological models

beik_sclc

bind

biocomparator

software toolset to compare biological-models

bngl2pysb

A BioNetGen to PySB converter. Currently in development

boolean2mechanism

Builds PySB models from a Boolean model and sets of potential biochemical mechanisms.

boolean_rules_creator

Unsupervised logic-based mechanism inference for network-driven biological processes

cellcycle

Repository for the S/G2 and M/G1 cell cycle phase transitions.

corm

COX2 Reaction Model

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

cupsoda

cupSODA is CUDA-powered coarse-grain deterministic simulator of mass-action kinetics models

ddrxm

Division Death Ratio Crosstalk Model

earm

EARM V2.0 FILES

earm_mutations_dynamics

egfr

PySB model of the EGFR receptors with MAPK and AKT pathways

g1_s

G1/S cell cycle model based on Iwamoto et al. (2008)

g2_m

G2/M Cell Cycle Transition from Iwamoto et al. (2011)

gabi

PySB with Gabi integration

gleipnir

Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling

gpu_ssa_paper2023

hetero_growth

hypbuilder

HypBuilder is software for the large scale construction of physicochemical models in the format of PySB.

incyte

For Incyte project and Melissa's data

jarm

JNK3 activation reaction model

jarm_analysis