The problem with xlim about nonpareil HOT 4 CLOSED

The arrow points to the inflection point of the curve.

from nonpareil.

Hello @IM-han

Try passing xlim explicitly as a plot option:

Nonpareil.set(File, labels=Name, plot.opts=list(xlim=c(1e+8,1e+15)))

from nonpareil.

Thank you. I get it. How about the picture below. Dose the circle on the curve mean the same with the arrow in the picture I get ?

from nonpareil.

No, the circle means the actual sequencing effort and estimated average coverage of the sample. It's the equivalent to the rightmost end of the solid lines in the previous figure.

You can check out this example:
http://enve-omics.ce.gatech.edu/nonpareil/results?jid=example1

Play with the radio selects (Plot model only, Plot curve only, and Plot curve and model) to see how they correspond to each other.

It's strange that this last figure doesn't include the arrows, perhaps you turned off the arrow plotting with plot.diversity=FALSE? Or maybe they happen to be hidden behind the legend box?

I'm closing this issue, but please feel free to comment again and/or reopen if you have any more questions.

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