Fatal error: Cannot open the file: reads.fa about nonpareil HOT 6 CLOSED

It sounds like the file, reads.fa, is not found. Try specifying exact path of reads.fa

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how did install nonpareil. Did you use the release or did you clone

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Hello @gunturus , I git cloned nonpareil. I did exactly everything that was mentioned on Nonpareil webpage, but I still got the error message.

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Is the file reads.fa present in ~/Documents/nonpareil-trial? Please do ls ~/Documents/nonpareil-trial and post the output.

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Hello Guys,

Sorry for the late reply. Here is the output:

tanshiming@S620100019205:~/Documents/nonpareil-trial$ ls ~/Documents/nonpareil-trial
reads.fasta UPWRP0508161KA_TCCGGAGA-ATAGAGGC_L1L2_R1_001.fastq

My reads.fasta file is definitely in the same folder.

Any suggestions?

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reads.fa ≠ reads.fasta

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