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agrimet_scraper

Collects weather data from AgriMet

algorithms

Bug-tracking for Jeff's algorithms book, notes, etc.

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

anatomyofmatplotlib

Anatomy of Matplotlib -- tutorial developed for the SciPy conference

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

anti-desiccant_impact

Scripts used to analyze anti-desiccant impacts on the boxwood phyllosphere microbiome

bamtools

C++ API & command-line toolkit for working with BAM data

bioinformatics-algorithms

Implementations of bioinformatics algorithms in Python

bioinformatics_miniseries

bioinformatics_miniseries

biom-format

The Biological Observation Matrix (BIOM) Format Project

cc-linear-mixed-models

Introduction to linear mixed models

cdhit

Automatically exported from code.google.com/p/cdhit

cnc_remastered_collection

co-occurrence

R scripts for performing co-occurrence analyses

co1classifier

This repository contains CO1 reference sets that can be used with the RDP Classifier to classify CO1 metabarcode sequences.

coding-interview-university

A complete computer science study plan to become a software engineer.

complete-javascript-course

Starter files, final projects and FAQ for my Complete JavaScript course

complexheatmap

Make Complex Heatmaps

computationalbiologybooks

coursera

Coursera Materials

css-spinner

small, elegant pure css spinner for ajax or loading animation

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dailycodingproblem

Record my solution to the book Daily Coding Problem

dash-bootstrap-components

Bootstrap components for Plotly Dash

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

deeplearning-biology

A list of deep learning implementations in biology

dge_workshop

dge_workshop_salmon

earthnetwork

Microbial co-occurrence network inferred from Earth Microbiome Project

esa_vegan

Content for a workshop that was held at ESA 2014 on using R's vegan package for community ecology analyses.